Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC16.42■□□□□ 0.22
Trim54Q9ERP3 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Gm43125-201ENSMUST00000201724 730 ntBASIC16.41■□□□□ 0.22
Trim54Q9ERP3 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim54Q9ERP3 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim54Q9ERP3 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 AA543401-201ENSMUST00000164248 1269 ntBASIC16.39■□□□□ 0.21
Trim54Q9ERP3 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Gm6018-201ENSMUST00000216090 1306 ntBASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Trim54Q9ERP3 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim54Q9ERP3 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms