Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Mir3081-201ENSMUST00000175305 84 ntBASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Gm42901-201ENSMUST00000197735 3171 ntBASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ddx28Q9CWT6 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Rprl3-201ENSMUST00000157400 290 ntBASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Gm8349-201ENSMUST00000182720 1003 ntBASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx28Q9CWT6 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Gm6257-201ENSMUST00000163864 910 ntBASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx28Q9CWT6 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx28Q9CWT6 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms