Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Ushbp1Q8R370 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
Ushbp1Q8R370 Mir3113-201ENSMUST00000175478 76 ntBASIC17■□□□□ 0.31
Ushbp1Q8R370 Gm8318-201ENSMUST00000182954 872 ntBASIC17■□□□□ 0.31
Ushbp1Q8R370 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC17■□□□□ 0.31
Ushbp1Q8R370 Bloc1s5-203ENSMUST00000224902 612 ntBASIC17■□□□□ 0.31
Ushbp1Q8R370 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Ushbp1Q8R370 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Gm13034-201ENSMUST00000121342 3177 ntBASIC17■□□□□ 0.31
Ushbp1Q8R370 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC17■□□□□ 0.31
Ushbp1Q8R370 Gm43352-201ENSMUST00000196419 3065 ntBASIC17■□□□□ 0.31
Ushbp1Q8R370 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Sybu-209ENSMUST00000228639 4113 ntBASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 AC159106.1-201ENSMUST00000224421 690 ntBASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Ushbp1Q8R370 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ushbp1Q8R370 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Gm4913-201ENSMUST00000117075 1290 ntBASIC16.97■□□□□ 0.31
Ushbp1Q8R370 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms