Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim9Q8C7M3 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim9Q8C7M3 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim9Q8C7M3 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC16.74■□□□□ 0.27
Trim9Q8C7M3 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Trim9Q8C7M3 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim9Q8C7M3 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim9Q8C7M3 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim9Q8C7M3 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim9Q8C7M3 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim9Q8C7M3 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Mir5126-201ENSMUST00000175513 77 ntBASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Gm9449-201ENSMUST00000207265 1011 ntBASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim9Q8C7M3 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Gm37728-201ENSMUST00000195025 2292 ntBASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Gm18195-201ENSMUST00000207604 706 ntBASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Gm15590-201ENSMUST00000078419 552 ntBASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim9Q8C7M3 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Gm27628-201ENSMUST00000184911 107 ntBASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Gm43767-201ENSMUST00000198933 381 ntBASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim9Q8C7M3 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms