Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Gm8242-201ENSMUST00000193029 1420 ntBASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Gm27301-201ENSMUST00000184012 127 ntBASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim47Q8C0E3 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Gm23935-201ENSMUST00000102303 57 ntBASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Gm24270-201ENSMUST00000102326 57 ntBASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Gm24245-201ENSMUST00000157318 57 ntBASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Gm6736-201ENSMUST00000166583 948 ntBASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Gm2756-201ENSMUST00000195851 400 ntBASIC16.79■□□□□ 0.28
Trim47Q8C0E3 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Gm20553-201ENSMUST00000204205 844 ntBASIC16.79■□□□□ 0.28
Trim47Q8C0E3 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
Trim47Q8C0E3 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Gm6226-201ENSMUST00000117765 1146 ntBASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Gm2272-201ENSMUST00000194903 582 ntBASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim47Q8C0E3 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Gm15427-201ENSMUST00000117288 531 ntBASIC16.77■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms