Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Gm27321-201ENSMUST00000185021 205 ntBASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Gm38294-201ENSMUST00000192831 381 ntBASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Gm13223-201ENSMUST00000118609 747 ntBASIC20.73■□□□□ 0.91
Usp40Q8BWR4 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Gm9824-201ENSMUST00000178707 561 ntBASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC20.73■□□□□ 0.91
Usp40Q8BWR4 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp40Q8BWR4 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Gm43548-201ENSMUST00000197139 2353 ntBASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC20.72■□□□□ 0.91
Usp40Q8BWR4 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp40Q8BWR4 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
Usp40Q8BWR4 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Usp40Q8BWR4 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
Usp40Q8BWR4 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Usp40Q8BWR4 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Gm8116-201ENSMUST00000182917 1201 ntBASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Gm13127-201ENSMUST00000118978 1389 ntBASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp40Q8BWR4 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms