Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
Scaf4Q6PFF0 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Grk6-207ENSMUST00000225925 2769 ntBASIC15□□□□□ -0.01
Scaf4Q6PFF0 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scaf4Q6PFF0 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Gm23547-201ENSMUST00000158210 271 ntBASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scaf4Q6PFF0 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Gm9856-201ENSMUST00000217077 2578 ntBASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Gm8258-201ENSMUST00000055593 1449 ntBASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scaf4Q6PFF0 Celf4-206ENSMUST00000224553 1729 ntBASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 AC162938.1-201ENSMUST00000213140 2323 ntBASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Gm44454-201ENSMUST00000198541 138 ntBASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Scaf4Q6PFF0 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Scaf4Q6PFF0 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.96□□□□□ -0.01
Scaf4Q6PFF0 Gm43205-201ENSMUST00000198622 1968 ntBASIC14.96□□□□□ -0.01
Scaf4Q6PFF0 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms