Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Gm14722-201ENSMUST00000118943 689 ntBASIC14.79□□□□□ -0.04
Col12a1Q60847 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col12a1Q60847 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col12a1Q60847 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
Col12a1Q60847 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC14.78□□□□□ -0.04
Col12a1Q60847 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Col12a1Q60847 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Mir692-1-201ENSMUST00000102263 109 ntBASIC14.78□□□□□ -0.04
Col12a1Q60847 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
Col12a1Q60847 Gm5187-201ENSMUST00000117317 991 ntBASIC14.78□□□□□ -0.04
Col12a1Q60847 Gm7820-201ENSMUST00000121012 1052 ntBASIC14.78□□□□□ -0.04
Col12a1Q60847 AC154687.2-201ENSMUST00000223853 640 ntBASIC14.78□□□□□ -0.04
Col12a1Q60847 AC149588.3-201ENSMUST00000227515 150 ntBASIC14.78□□□□□ -0.04
Col12a1Q60847 AC140451.2-201ENSMUST00000228030 664 ntBASIC14.78□□□□□ -0.04
Col12a1Q60847 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Col12a1Q60847 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col12a1Q60847 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
Col12a1Q60847 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC14.77□□□□□ -0.04
Col12a1Q60847 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col12a1Q60847 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col12a1Q60847 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col12a1Q60847 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col12a1Q60847 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col12a1Q60847 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col12a1Q60847 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col12a1Q60847 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col12a1Q60847 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col12a1Q60847 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC14.77□□□□□ -0.05
Col12a1Q60847 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC14.77□□□□□ -0.05
Col12a1Q60847 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col12a1Q60847 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col12a1Q60847 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col12a1Q60847 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col12a1Q60847 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col12a1Q60847 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col12a1Q60847 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col12a1Q60847 Gm27731-201ENSMUST00000185192 107 ntBASIC14.77□□□□□ -0.05
Col12a1Q60847 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col12a1Q60847 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC14.76□□□□□ -0.05
Col12a1Q60847 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC14.76□□□□□ -0.05
Col12a1Q60847 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC14.76□□□□□ -0.05
Col12a1Q60847 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col12a1Q60847 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col12a1Q60847 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col12a1Q60847 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Col12a1Q60847 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col12a1Q60847 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col12a1Q60847 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col12a1Q60847 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC14.76□□□□□ -0.05
Col12a1Q60847 Gm8969-201ENSMUST00000199694 526 ntBASIC14.76□□□□□ -0.05
Col12a1Q60847 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col12a1Q60847 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col12a1Q60847 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC14.76□□□□□ -0.05
Col12a1Q60847 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Col12a1Q60847 AC110817.1-201ENSMUST00000225706 605 ntBASIC14.76□□□□□ -0.05
Col12a1Q60847 Gm42901-201ENSMUST00000197735 3171 ntBASIC14.76□□□□□ -0.05
Col12a1Q60847 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col12a1Q60847 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col12a1Q60847 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col12a1Q60847 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Col12a1Q60847 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
Col12a1Q60847 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC14.75□□□□□ -0.05
Col12a1Q60847 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Gm12341-201ENSMUST00000119724 503 ntBASIC14.75□□□□□ -0.05
Col12a1Q60847 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 AC150560.1-201ENSMUST00000227731 1187 ntBASIC14.75□□□□□ -0.05
Col12a1Q60847 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Col12a1Q60847 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Gm44974-201ENSMUST00000206387 1279 ntBASIC14.75□□□□□ -0.05
Col12a1Q60847 Gm9229-201ENSMUST00000222777 126 ntBASIC14.75□□□□□ -0.05
Col12a1Q60847 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col12a1Q60847 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms