Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Limch1Q3UH68 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Limch1Q3UH68 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Gm23935-201ENSMUST00000102303 57 ntBASIC17.86■□□□□ 0.45
Limch1Q3UH68 Gm24270-201ENSMUST00000102326 57 ntBASIC17.86■□□□□ 0.45
Limch1Q3UH68 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC17.86■□□□□ 0.45
Limch1Q3UH68 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.86■□□□□ 0.45
Limch1Q3UH68 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Gm24245-201ENSMUST00000157318 57 ntBASIC17.86■□□□□ 0.45
Limch1Q3UH68 Gm7556-201ENSMUST00000201178 1084 ntBASIC17.86■□□□□ 0.45
Limch1Q3UH68 AC122024.2-201ENSMUST00000220086 871 ntBASIC17.86■□□□□ 0.45
Limch1Q3UH68 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Limch1Q3UH68 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Limch1Q3UH68 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Gm4995-201ENSMUST00000117247 432 ntBASIC17.85■□□□□ 0.45
Limch1Q3UH68 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.85■□□□□ 0.45
Limch1Q3UH68 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Gm24513-201ENSMUST00000174964 138 ntBASIC17.85■□□□□ 0.45
Limch1Q3UH68 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.85■□□□□ 0.45
Limch1Q3UH68 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Gm45683-201ENSMUST00000210825 1247 ntBASIC17.85■□□□□ 0.45
Limch1Q3UH68 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 AC090659.1-201ENSMUST00000224334 768 ntBASIC17.85■□□□□ 0.45
Limch1Q3UH68 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Limch1Q3UH68 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Limch1Q3UH68 AC225888.1-201ENSMUST00000227184 728 ntBASIC17.84■□□□□ 0.45
Limch1Q3UH68 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Ptprs-211ENSMUST00000223859 5588 ntBASIC17.84■□□□□ 0.45
Limch1Q3UH68 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Limch1Q3UH68 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms