Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm7783-201ENSMUST00000204795 781 ntBASIC14.83□□□□□ -0.04
Col9a1Q05722 Gm7067-201ENSMUST00000207698 1249 ntBASIC14.83□□□□□ -0.04
Col9a1Q05722 Gm10046-201ENSMUST00000208208 632 ntTSL 2 BASIC14.83□□□□□ -0.04
Col9a1Q05722 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC14.83□□□□□ -0.04
Col9a1Q05722 AC079680.1-201ENSMUST00000218730 649 ntTSL 5 BASIC14.83□□□□□ -0.04
Col9a1Q05722 CU024892.2-201ENSMUST00000224608 832 ntBASIC14.83□□□□□ -0.04
Col9a1Q05722 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Col9a1Q05722 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Col9a1Q05722 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Col9a1Q05722 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC14.82□□□□□ -0.04
Col9a1Q05722 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Gm11841-201ENSMUST00000117060 1963 ntBASIC14.82□□□□□ -0.04
Col9a1Q05722 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Col9a1Q05722 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC14.82□□□□□ -0.04
Col9a1Q05722 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC14.82□□□□□ -0.04
Col9a1Q05722 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC14.82□□□□□ -0.04
Col9a1Q05722 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC14.82□□□□□ -0.04
Col9a1Q05722 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
Col9a1Q05722 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC14.82□□□□□ -0.04
Col9a1Q05722 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Col9a1Q05722 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC14.82□□□□□ -0.04
Col9a1Q05722 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Gm46209-201ENSMUST00000217912 553 ntBASIC14.82□□□□□ -0.04
Col9a1Q05722 AC125539.1-202ENSMUST00000226449 670 ntBASIC14.82□□□□□ -0.04
Col9a1Q05722 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Col9a1Q05722 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC14.82□□□□□ -0.04
Col9a1Q05722 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Col9a1Q05722 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col9a1Q05722 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Col9a1Q05722 Gm5184-201ENSMUST00000220417 1702 ntBASIC14.81□□□□□ -0.04
Col9a1Q05722 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.81□□□□□ -0.04
Col9a1Q05722 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
Col9a1Q05722 Ldha-ps-201ENSMUST00000119390 995 ntBASIC14.81□□□□□ -0.04
Col9a1Q05722 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC14.81□□□□□ -0.04
Col9a1Q05722 Gm26083-201ENSMUST00000157904 193 ntBASIC14.81□□□□□ -0.04
Col9a1Q05722 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC14.81□□□□□ -0.04
Col9a1Q05722 Gm42919-201ENSMUST00000197753 1284 ntBASIC14.81□□□□□ -0.04
Col9a1Q05722 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC14.81□□□□□ -0.04
Col9a1Q05722 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC14.81□□□□□ -0.04
Col9a1Q05722 Gm35638-201ENSMUST00000220724 652 ntBASIC14.81□□□□□ -0.04
Col9a1Q05722 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Col9a1Q05722 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Krcc1-201ENSMUST00000080949 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Col9a1Q05722 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col9a1Q05722 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col9a1Q05722 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col9a1Q05722 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col9a1Q05722 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Col9a1Q05722 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col9a1Q05722 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col9a1Q05722 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col9a1Q05722 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col9a1Q05722 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col9a1Q05722 Gm5187-201ENSMUST00000117317 991 ntBASIC14.8□□□□□ -0.04
Col9a1Q05722 Gm15678-201ENSMUST00000117573 960 ntBASIC14.8□□□□□ -0.04
Col9a1Q05722 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Col9a1Q05722 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
Col9a1Q05722 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC14.8□□□□□ -0.04
Col9a1Q05722 Gm27486-201ENSMUST00000184923 80 ntBASIC14.8□□□□□ -0.04
Col9a1Q05722 Gm29107-201ENSMUST00000190910 347 ntBASIC14.8□□□□□ -0.04
Col9a1Q05722 Gm38188-201ENSMUST00000192879 856 ntBASIC14.8□□□□□ -0.04
Col9a1Q05722 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC14.8□□□□□ -0.04
Col9a1Q05722 Gm18916-201ENSMUST00000198264 1246 ntBASIC14.8□□□□□ -0.04
Col9a1Q05722 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col9a1Q05722 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col9a1Q05722 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col9a1Q05722 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms