Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm12017-201ENSMUST00000122453 1003 ntBASIC13.1□□□□□ -0.31
Nkx3-1P97436 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Nkx3-1P97436 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.1□□□□□ -0.31
Nkx3-1P97436 Gm20949-201ENSMUST00000206478 952 ntBASIC13.1□□□□□ -0.31
Nkx3-1P97436 AC131187.1-201ENSMUST00000224567 809 ntBASIC13.1□□□□□ -0.31
Nkx3-1P97436 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 CT025626.1-201ENSMUST00000223735 1455 ntBASIC13.1□□□□□ -0.31
Nkx3-1P97436 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Nkx3-1P97436 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Gm7774-201ENSMUST00000200064 533 ntBASIC13.09□□□□□ -0.31
Nkx3-1P97436 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC13.09□□□□□ -0.31
Nkx3-1P97436 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Nkx3-1P97436 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Nkx3-1P97436 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Nkx3-1P97436 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Nkx3-1P97436 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Gm22175-201ENSMUST00000175007 78 ntBASIC13.08□□□□□ -0.32
Nkx3-1P97436 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC13.08□□□□□ -0.32
Nkx3-1P97436 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx3-1P97436 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC13.07□□□□□ -0.32
Nkx3-1P97436 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Gm24158-201ENSMUST00000175263 71 ntBASIC13.07□□□□□ -0.32
Nkx3-1P97436 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms