Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Gm11960-202ENSMUST00000181063 2858 ntBASIC16.7■□□□□ 0.26
Hmgb1P63158 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.7■□□□□ 0.26
Hmgb1P63158 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC16.7■□□□□ 0.26
Hmgb1P63158 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.7■□□□□ 0.26
Hmgb1P63158 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Hmgb1P63158 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Hmgb1P63158 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Hmgb1P63158 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Gm8242-201ENSMUST00000193029 1420 ntBASIC16.7■□□□□ 0.26
Hmgb1P63158 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.7■□□□□ 0.26
Hmgb1P63158 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC16.69■□□□□ 0.26
Hmgb1P63158 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Hmgb1P63158 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Hmgb1P63158 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC16.69■□□□□ 0.26
Hmgb1P63158 AC160338.1-201ENSMUST00000214232 705 ntBASIC16.69■□□□□ 0.26
Hmgb1P63158 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Hmgb1P63158 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb1P63158 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Hmgb1P63158 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC16.68■□□□□ 0.26
Hmgb1P63158 Gm7901-201ENSMUST00000120430 1597 ntBASIC16.68■□□□□ 0.26
Hmgb1P63158 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.68■□□□□ 0.26
Hmgb1P63158 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Hmgb1P63158 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.68■□□□□ 0.26
Hmgb1P63158 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Hmgb1P63158 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.68■□□□□ 0.26
Hmgb1P63158 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.68■□□□□ 0.26
Hmgb1P63158 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Gm6296-201ENSMUST00000222599 943 ntBASIC16.68■□□□□ 0.26
Hmgb1P63158 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Gm9768-201ENSMUST00000206007 2861 ntBASIC16.68■□□□□ 0.26
Hmgb1P63158 Gm16425-201ENSMUST00000118143 3130 ntBASIC16.68■□□□□ 0.26
Hmgb1P63158 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
Hmgb1P63158 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Hmgb1P63158 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb1P63158 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Hmgb1P63158 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Hmgb1P63158 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Hmgb1P63158 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC16.67■□□□□ 0.26
Hmgb1P63158 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Gm27646-201ENSMUST00000183989 110 ntBASIC16.67■□□□□ 0.26
Hmgb1P63158 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC16.67■□□□□ 0.26
Hmgb1P63158 CT009510.1-201ENSMUST00000227972 270 ntBASIC16.67■□□□□ 0.26
Hmgb1P63158 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC16.67■□□□□ 0.26
Hmgb1P63158 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.67■□□□□ 0.26
Hmgb1P63158 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Hmgb1P63158 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms