Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Sox1P53783 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC15.44■□□□□ 0.06
Sox1P53783 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.44■□□□□ 0.06
Sox1P53783 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Sox1P53783 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
Sox1P53783 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC15.44■□□□□ 0.06
Sox1P53783 Gm42466-201ENSMUST00000202099 1301 ntBASIC15.43■□□□□ 0.06
Sox1P53783 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC15.43■□□□□ 0.06
Sox1P53783 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Sox1P53783 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Gm43338-201ENSMUST00000198617 2223 ntBASIC15.43■□□□□ 0.06
Sox1P53783 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC15.43■□□□□ 0.06
Sox1P53783 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Sox1P53783 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
Sox1P53783 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC15.43■□□□□ 0.06
Sox1P53783 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
Sox1P53783 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Sox1P53783 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
Sox1P53783 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 AC154687.2-201ENSMUST00000223853 640 ntBASIC15.43■□□□□ 0.06
Sox1P53783 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Gm8399-201ENSMUST00000082300 1117 ntBASIC15.43■□□□□ 0.06
Sox1P53783 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Sox1P53783 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Sox1P53783 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Sox1P53783 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC15.42■□□□□ 0.06
Sox1P53783 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC15.42■□□□□ 0.06
Sox1P53783 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Sox1P53783 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Gm5566-201ENSMUST00000116118 459 ntBASIC15.42■□□□□ 0.06
Sox1P53783 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC15.42■□□□□ 0.06
Sox1P53783 Gm28760-201ENSMUST00000185995 736 ntBASIC15.42■□□□□ 0.06
Sox1P53783 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC15.42■□□□□ 0.06
Sox1P53783 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Sox1P53783 AC140451.2-201ENSMUST00000228030 664 ntBASIC15.42■□□□□ 0.06
Sox1P53783 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Sox1P53783 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Gm43294-201ENSMUST00000202850 2490 ntBASIC15.42■□□□□ 0.06
Sox1P53783 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Sox1P53783 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Sox1P53783 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC15.41■□□□□ 0.06
Sox1P53783 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Sox1P53783 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Sox1P53783 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
Sox1P53783 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC15.41■□□□□ 0.06
Sox1P53783 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC15.41■□□□□ 0.06
Sox1P53783 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC15.41■□□□□ 0.06
Sox1P53783 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC15.41■□□□□ 0.06
Sox1P53783 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC15.41■□□□□ 0.06
Sox1P53783 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 CT485787.1-201ENSMUST00000225617 968 ntBASIC15.41■□□□□ 0.06
Sox1P53783 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Gm9797-201ENSMUST00000052902 613 ntBASIC15.41■□□□□ 0.06
Sox1P53783 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Sox1P53783 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox1P53783 Gm15635-204ENSMUST00000208024 2539 ntBASIC15.41■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms