Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Cdx2P43241 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Cdx2P43241 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Cdx2P43241 Ighv8-7-201ENSMUST00000194349 297 ntBASIC14.36□□□□□ -0.11
Cdx2P43241 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Cdx2P43241 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC14.36□□□□□ -0.11
Cdx2P43241 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC14.36□□□□□ -0.11
Cdx2P43241 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 AC131743.5-201ENSMUST00000220775 1618 ntBASIC14.36□□□□□ -0.11
Cdx2P43241 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Cdx2P43241 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cdx2P43241 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC14.35□□□□□ -0.11
Cdx2P43241 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC14.35□□□□□ -0.11
Cdx2P43241 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Cdx2P43241 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC14.35□□□□□ -0.11
Cdx2P43241 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Cdx2P43241 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Cdx2P43241 Gm14767-201ENSMUST00000121559 586 ntBASIC14.35□□□□□ -0.11
Cdx2P43241 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC14.35□□□□□ -0.11
Cdx2P43241 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC14.35□□□□□ -0.11
Cdx2P43241 Gm9063-201ENSMUST00000223299 582 ntBASIC14.35□□□□□ -0.11
Cdx2P43241 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Cdx2P43241 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC14.35□□□□□ -0.11
Cdx2P43241 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Cdx2P43241 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cdx2P43241 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Cdx2P43241 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Cdx2P43241 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC14.34□□□□□ -0.11
Cdx2P43241 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC14.34□□□□□ -0.11
Cdx2P43241 Gm16215-201ENSMUST00000161990 637 ntBASIC14.34□□□□□ -0.11
Cdx2P43241 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Cdx2P43241 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC14.34□□□□□ -0.11
Cdx2P43241 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Cdx2P43241 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdx2P43241 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.11
Cdx2P43241 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Cdx2P43241 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Cdx2P43241 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Cdx2P43241 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Cdx2P43241 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Cdx2P43241 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx2P43241 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx2P43241 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC14.33□□□□□ -0.12
Cdx2P43241 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx2P43241 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Cdx2P43241 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx2P43241 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cdx2P43241 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC14.33□□□□□ -0.12
Cdx2P43241 Gm7488-201ENSMUST00000117148 684 ntBASIC14.33□□□□□ -0.12
Cdx2P43241 Gm15487-201ENSMUST00000122373 465 ntBASIC14.33□□□□□ -0.12
Cdx2P43241 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Cdx2P43241 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Cdx2P43241 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Cdx2P43241 AC164567.1-201ENSMUST00000219185 960 ntBASIC14.33□□□□□ -0.12
Cdx2P43241 AC158529.1-201ENSMUST00000223618 239 ntBASIC14.33□□□□□ -0.12
Cdx2P43241 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 61.6 ms