Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Lire1P11260 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC14.39□□□□□ -0.11
Lire1P11260 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.39□□□□□ -0.11
Lire1P11260 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC14.39□□□□□ -0.11
Lire1P11260 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
Lire1P11260 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lire1P11260 CT030684.3-201ENSMUST00000227308 2445 ntBASIC14.39□□□□□ -0.11
Lire1P11260 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
Lire1P11260 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.38□□□□□ -0.11
Lire1P11260 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.38□□□□□ -0.11
Lire1P11260 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.38□□□□□ -0.11
Lire1P11260 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.38□□□□□ -0.11
Lire1P11260 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Lire1P11260 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Lire1P11260 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
Lire1P11260 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Lire1P11260 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Lire1P11260 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 AC167013.2-201ENSMUST00000228520 2684 ntBASIC14.38□□□□□ -0.11
Lire1P11260 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lire1P11260 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC14.38□□□□□ -0.11
Lire1P11260 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Gm37691-201ENSMUST00000192147 2573 ntBASIC14.37□□□□□ -0.11
Lire1P11260 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Gm15165-201ENSMUST00000118140 502 ntBASIC14.37□□□□□ -0.11
Lire1P11260 Gm1401-201ENSMUST00000122048 772 ntBASIC14.37□□□□□ -0.11
Lire1P11260 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC14.37□□□□□ -0.11
Lire1P11260 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC14.37□□□□□ -0.11
Lire1P11260 Gm44430-201ENSMUST00000203376 995 ntBASIC14.37□□□□□ -0.11
Lire1P11260 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Lire1P11260 AC132104.2-201ENSMUST00000215011 266 ntBASIC14.37□□□□□ -0.11
Lire1P11260 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Lire1P11260 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.37□□□□□ -0.11
Lire1P11260 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lire1P11260 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC14.36□□□□□ -0.11
Lire1P11260 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Lire1P11260 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Lire1P11260 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.36□□□□□ -0.11
Lire1P11260 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC14.36□□□□□ -0.11
Lire1P11260 Gm6296-201ENSMUST00000222599 943 ntBASIC14.36□□□□□ -0.11
Lire1P11260 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
Lire1P11260 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms