Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC12.6□□□□□ -0.39
Hmgb3O54879 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Hmgb3O54879 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC12.6□□□□□ -0.39
Hmgb3O54879 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC12.6□□□□□ -0.39
Hmgb3O54879 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC12.6□□□□□ -0.39
Hmgb3O54879 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Arhgef4-208ENSMUST00000211073 171 ntBASIC12.6□□□□□ -0.39
Hmgb3O54879 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Hmgb3O54879 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Hmgb3O54879 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
Hmgb3O54879 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Hmgb3O54879 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Hmgb3O54879 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hmgb3O54879 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC12.6□□□□□ -0.39
Hmgb3O54879 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC12.59□□□□□ -0.39
Hmgb3O54879 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Hmgb3O54879 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hmgb3O54879 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Hmgb3O54879 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Hmgb3O54879 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Hmgb3O54879 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC12.58□□□□□ -0.4
Hmgb3O54879 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Hmgb3O54879 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 AC153881.1-201ENSMUST00000214448 284 ntBASIC12.58□□□□□ -0.4
Hmgb3O54879 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC12.58□□□□□ -0.4
Hmgb3O54879 Slc35b2-207ENSMUST00000226086 850 ntBASIC12.58□□□□□ -0.4
Hmgb3O54879 Odf3b-204ENSMUST00000227834 930 ntBASIC12.58□□□□□ -0.4
Hmgb3O54879 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hmgb3O54879 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms