Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Gm27306-201ENSMUST00000183970 107 ntBASIC18.16■□□□□ 0.5
Ube4aE9Q735 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC18.15■□□□□ 0.5
Ube4aE9Q735 Gm5049-201ENSMUST00000195878 1590 ntBASIC18.15■□□□□ 0.5
Ube4aE9Q735 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ube4aE9Q735 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Ube4aE9Q735 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ube4aE9Q735 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ube4aE9Q735 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ube4aE9Q735 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Gm42466-201ENSMUST00000202099 1301 ntBASIC18.14■□□□□ 0.49
Ube4aE9Q735 Gm13127-201ENSMUST00000118978 1389 ntBASIC18.14■□□□□ 0.49
Ube4aE9Q735 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ube4aE9Q735 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC18.13■□□□□ 0.49
Ube4aE9Q735 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC18.13■□□□□ 0.49
Ube4aE9Q735 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ube4aE9Q735 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ube4aE9Q735 Gm18766-201ENSMUST00000189811 808 ntBASIC18.12■□□□□ 0.49
Ube4aE9Q735 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 64.7 ms