Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
Usp40Q8BWR4 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Usp40Q8BWR4 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Usp40Q8BWR4 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
Usp40Q8BWR4 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
Usp40Q8BWR4 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Usp40Q8BWR4 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Usp40Q8BWR4 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
Usp40Q8BWR4 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Usp40Q8BWR4 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Usp40Q8BWR4 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Usp40Q8BWR4 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Usp40Q8BWR4 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
Usp40Q8BWR4 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC31.43■■■□□ 2.62
Usp40Q8BWR4 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Usp40Q8BWR4 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
Usp40Q8BWR4 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Usp40Q8BWR4 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
Usp40Q8BWR4 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Usp40Q8BWR4 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Usp40Q8BWR4 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Usp40Q8BWR4 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Usp40Q8BWR4 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Usp40Q8BWR4 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Usp40Q8BWR4 AC117769.4-201ENSMUST00000225679 685 ntBASIC31.38■■■□□ 2.61
Usp40Q8BWR4 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC31.38■■■□□ 2.61
Usp40Q8BWR4 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Usp40Q8BWR4 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
Usp40Q8BWR4 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
Usp40Q8BWR4 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Usp40Q8BWR4 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Usp40Q8BWR4 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Usp40Q8BWR4 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC31.36■■■□□ 2.61
Usp40Q8BWR4 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Usp40Q8BWR4 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC31.34■■■□□ 2.61
Usp40Q8BWR4 Gm43592-201ENSMUST00000196922 1165 ntBASIC31.34■■■□□ 2.61
Usp40Q8BWR4 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Usp40Q8BWR4 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Usp40Q8BWR4 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Usp40Q8BWR4 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC31.33■■■□□ 2.61
Usp40Q8BWR4 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Usp40Q8BWR4 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Usp40Q8BWR4 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
Usp40Q8BWR4 Gm5812-201ENSMUST00000061073 957 ntBASIC31.33■■■□□ 2.61
Usp40Q8BWR4 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC31.33■■■□□ 2.61
Usp40Q8BWR4 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Usp40Q8BWR4 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC31.32■■■□□ 2.6
Usp40Q8BWR4 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
Usp40Q8BWR4 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC31.31■■■□□ 2.6
Usp40Q8BWR4 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Usp40Q8BWR4 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Usp40Q8BWR4 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Usp40Q8BWR4 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Usp40Q8BWR4 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Usp40Q8BWR4 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC31.3■■■□□ 2.6
Usp40Q8BWR4 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
Usp40Q8BWR4 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Usp40Q8BWR4 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC31.28■■■□□ 2.6
Usp40Q8BWR4 AC164433.2-201ENSMUST00000226346 1701 ntBASIC31.28■■■□□ 2.6
Usp40Q8BWR4 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Usp40Q8BWR4 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Usp40Q8BWR4 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Usp40Q8BWR4 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Usp40Q8BWR4 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Usp40Q8BWR4 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Usp40Q8BWR4 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Usp40Q8BWR4 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
Usp40Q8BWR4 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
Usp40Q8BWR4 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Usp40Q8BWR4 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC31.24■■■□□ 2.59
Usp40Q8BWR4 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC31.24■■■□□ 2.59
Usp40Q8BWR4 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Usp40Q8BWR4 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC31.24■■■□□ 2.59
Usp40Q8BWR4 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC31.23■■■□□ 2.59
Usp40Q8BWR4 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC31.22■■■□□ 2.59
Usp40Q8BWR4 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC31.22■■■□□ 2.59
Usp40Q8BWR4 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
Usp40Q8BWR4 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Usp40Q8BWR4 Gm13238-201ENSMUST00000117655 780 ntBASIC31.2■■■□□ 2.59
Usp40Q8BWR4 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Usp40Q8BWR4 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
Usp40Q8BWR4 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC31.2■■■□□ 2.58
Usp40Q8BWR4 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
Usp40Q8BWR4 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC31.19■■■□□ 2.58
Usp40Q8BWR4 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC31.19■■■□□ 2.58
Usp40Q8BWR4 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
Usp40Q8BWR4 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
Usp40Q8BWR4 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
Usp40Q8BWR4 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Usp40Q8BWR4 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
Usp40Q8BWR4 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Usp40Q8BWR4 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Usp40Q8BWR4 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Usp40Q8BWR4 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Usp40Q8BWR4 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
Usp40Q8BWR4 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Usp40Q8BWR4 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Usp40Q8BWR4 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Usp40Q8BWR4 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Usp40Q8BWR4 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Retrieved 100 of 76,532 protein–RNA pairs in 7.9 ms