Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdhgb8A0A140LI48 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdhgb8A0A140LI48 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdhgb8A0A140LI48 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdhgb8A0A140LI48 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
Pcdhgb8A0A140LI48 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdhgb8A0A140LI48 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhgb8A0A140LI48 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Pcdhgb8A0A140LI48 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhgb8A0A140LI48 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Pcdhgb8A0A140LI48 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdhgb8A0A140LI48 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdhgb8A0A140LI48 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdhgb8A0A140LI48 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
Pcdhgb8A0A140LI48 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdhgb8A0A140LI48 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdhgb8A0A140LI48 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Pcdhgb8A0A140LI48 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Pcdhgb8A0A140LI48 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.09■□□□□ 0.81
Pcdhgb8A0A140LI48 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdhgb8A0A140LI48 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcdhgb8A0A140LI48 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Pcdhgb8A0A140LI48 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Pcdhgb8A0A140LI48 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcdhgb8A0A140LI48 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcdhgb8A0A140LI48 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdhgb8A0A140LI48 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.07■□□□□ 0.8
Pcdhgb8A0A140LI48 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdhgb8A0A140LI48 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdhgb8A0A140LI48 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdhgb8A0A140LI48 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdhgb8A0A140LI48 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Pcdhgb8A0A140LI48 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdhgb8A0A140LI48 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.06■□□□□ 0.8
Pcdhgb8A0A140LI48 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdhgb8A0A140LI48 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
Pcdhgb8A0A140LI48 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdhgb8A0A140LI48 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdhgb8A0A140LI48 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.05■□□□□ 0.8
Pcdhgb8A0A140LI48 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.05■□□□□ 0.8
Pcdhgb8A0A140LI48 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdhgb8A0A140LI48 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcdhgb8A0A140LI48 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcdhgb8A0A140LI48 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Pcdhgb8A0A140LI48 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Pcdhgb8A0A140LI48 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcdhgb8A0A140LI48 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcdhgb8A0A140LI48 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcdhgb8A0A140LI48 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcdhgb8A0A140LI48 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcdhgb8A0A140LI48 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcdhgb8A0A140LI48 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcdhgb8A0A140LI48 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcdhgb8A0A140LI48 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Pcdhgb8A0A140LI48 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcdhgb8A0A140LI48 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Pcdhgb8A0A140LI48 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdhgb8A0A140LI48 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdhgb8A0A140LI48 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdhgb8A0A140LI48 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdhgb8A0A140LI48 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdhgb8A0A140LI48 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdhgb8A0A140LI48 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Pcdhgb8A0A140LI48 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcdhgb8A0A140LI48 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Pcdhgb8A0A140LI48 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20■□□□□ 0.79
Pcdhgb8A0A140LI48 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC20■□□□□ 0.79
Pcdhgb8A0A140LI48 Gm13042-201ENSMUST00000119244 1955 ntBASIC20■□□□□ 0.79
Pcdhgb8A0A140LI48 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Pcdhgb8A0A140LI48 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Pcdhgb8A0A140LI48 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
Pcdhgb8A0A140LI48 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Pcdhgb8A0A140LI48 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Pcdhgb8A0A140LI48 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Pcdhgb8A0A140LI48 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcdhgb8A0A140LI48 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Pcdhgb8A0A140LI48 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcdhgb8A0A140LI48 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcdhgb8A0A140LI48 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcdhgb8A0A140LI48 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcdhgb8A0A140LI48 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Pcdhgb8A0A140LI48 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Pcdhgb8A0A140LI48 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdhgb8A0A140LI48 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdhgb8A0A140LI48 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Pcdhgb8A0A140LI48 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdhgb8A0A140LI48 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdhgb8A0A140LI48 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdhgb8A0A140LI48 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdhgb8A0A140LI48 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdhgb8A0A140LI48 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdhgb8A0A140LI48 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Pcdhgb8A0A140LI48 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Pcdhgb8A0A140LI48 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Pcdhgb8A0A140LI48 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Pcdhgb8A0A140LI48 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC19.95■□□□□ 0.78
Pcdhgb8A0A140LI48 AC167019.3-201ENSMUST00000228225 1266 ntBASIC19.95■□□□□ 0.78
Pcdhgb8A0A140LI48 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdhgb8A0A140LI48 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdhgb8A0A140LI48 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms