Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trbv20A0A0B4J1H5 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trbv20A0A0B4J1H5 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trbv20A0A0B4J1H5 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trbv20A0A0B4J1H5 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
Trbv20A0A0B4J1H5 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.23■□□□□ 0.83
Trbv20A0A0B4J1H5 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC20.23■□□□□ 0.83
Trbv20A0A0B4J1H5 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trbv20A0A0B4J1H5 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.22■□□□□ 0.83
Trbv20A0A0B4J1H5 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.22■□□□□ 0.83
Trbv20A0A0B4J1H5 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trbv20A0A0B4J1H5 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.22■□□□□ 0.83
Trbv20A0A0B4J1H5 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Trbv20A0A0B4J1H5 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trbv20A0A0B4J1H5 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trbv20A0A0B4J1H5 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Trbv20A0A0B4J1H5 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trbv20A0A0B4J1H5 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC20.21■□□□□ 0.83
Trbv20A0A0B4J1H5 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trbv20A0A0B4J1H5 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.21■□□□□ 0.83
Trbv20A0A0B4J1H5 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trbv20A0A0B4J1H5 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trbv20A0A0B4J1H5 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trbv20A0A0B4J1H5 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trbv20A0A0B4J1H5 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Trbv20A0A0B4J1H5 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trbv20A0A0B4J1H5 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trbv20A0A0B4J1H5 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trbv20A0A0B4J1H5 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trbv20A0A0B4J1H5 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trbv20A0A0B4J1H5 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trbv20A0A0B4J1H5 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.19■□□□□ 0.82
Trbv20A0A0B4J1H5 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trbv20A0A0B4J1H5 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Trbv20A0A0B4J1H5 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trbv20A0A0B4J1H5 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trbv20A0A0B4J1H5 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trbv20A0A0B4J1H5 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trbv20A0A0B4J1H5 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Trbv20A0A0B4J1H5 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
Trbv20A0A0B4J1H5 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trbv20A0A0B4J1H5 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trbv20A0A0B4J1H5 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trbv20A0A0B4J1H5 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trbv20A0A0B4J1H5 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trbv20A0A0B4J1H5 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
Trbv20A0A0B4J1H5 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trbv20A0A0B4J1H5 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trbv20A0A0B4J1H5 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Trbv20A0A0B4J1H5 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trbv20A0A0B4J1H5 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trbv20A0A0B4J1H5 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC20.15■□□□□ 0.82
Trbv20A0A0B4J1H5 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trbv20A0A0B4J1H5 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Trbv20A0A0B4J1H5 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trbv20A0A0B4J1H5 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Trbv20A0A0B4J1H5 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Trbv20A0A0B4J1H5 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.14■□□□□ 0.81
Trbv20A0A0B4J1H5 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trbv20A0A0B4J1H5 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Trbv20A0A0B4J1H5 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trbv20A0A0B4J1H5 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trbv20A0A0B4J1H5 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trbv20A0A0B4J1H5 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trbv20A0A0B4J1H5 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv20A0A0B4J1H5 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv20A0A0B4J1H5 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv20A0A0B4J1H5 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv20A0A0B4J1H5 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trbv20A0A0B4J1H5 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.11■□□□□ 0.81
Trbv20A0A0B4J1H5 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.11■□□□□ 0.81
Trbv20A0A0B4J1H5 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trbv20A0A0B4J1H5 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trbv20A0A0B4J1H5 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trbv20A0A0B4J1H5 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trbv20A0A0B4J1H5 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trbv20A0A0B4J1H5 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.09■□□□□ 0.81
Trbv20A0A0B4J1H5 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trbv20A0A0B4J1H5 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Trbv20A0A0B4J1H5 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trbv20A0A0B4J1H5 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trbv20A0A0B4J1H5 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trbv20A0A0B4J1H5 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.09■□□□□ 0.81
Trbv20A0A0B4J1H5 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trbv20A0A0B4J1H5 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Trbv20A0A0B4J1H5 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trbv20A0A0B4J1H5 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trbv20A0A0B4J1H5 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trbv20A0A0B4J1H5 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Trbv20A0A0B4J1H5 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trbv20A0A0B4J1H5 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trbv20A0A0B4J1H5 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trbv20A0A0B4J1H5 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trbv20A0A0B4J1H5 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Trbv20A0A0B4J1H5 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trbv20A0A0B4J1H5 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trbv20A0A0B4J1H5 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC20.06■□□□□ 0.8
Trbv20A0A0B4J1H5 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trbv20A0A0B4J1H5 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trbv20A0A0B4J1H5 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 11.1 ms