Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Gm25745-201ENSMUST00000174945 133 ntBASIC14.4□□□□□ -0.1
Use1Q9CQ56 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC14.4□□□□□ -0.1
Use1Q9CQ56 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Use1Q9CQ56 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Gm13836-201ENSMUST00000121159 501 ntBASIC14.39□□□□□ -0.11
Use1Q9CQ56 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Gm12497-201ENSMUST00000138778 237 ntBASIC14.39□□□□□ -0.11
Use1Q9CQ56 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Mir7071-201ENSMUST00000184847 69 ntBASIC14.39□□□□□ -0.11
Use1Q9CQ56 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Use1Q9CQ56 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.38□□□□□ -0.11
Use1Q9CQ56 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Use1Q9CQ56 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Gm16425-201ENSMUST00000118143 3130 ntBASIC14.37□□□□□ -0.11
Use1Q9CQ56 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Gm7556-201ENSMUST00000201178 1084 ntBASIC14.37□□□□□ -0.11
Use1Q9CQ56 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Gm18622-201ENSMUST00000219361 595 ntBASIC14.37□□□□□ -0.11
Use1Q9CQ56 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Use1Q9CQ56 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms