Protein–RNA interactions for Protein: Q99JW4

Lims1, LIM and senescent cell antigen-like-containing domain protein 1, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lims1Q99JW4 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lims1Q99JW4 Gm9856-201ENSMUST00000217077 2578 ntBASIC13.88□□□□□ -0.19
Lims1Q99JW4 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lims1Q99JW4 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lims1Q99JW4 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lims1Q99JW4 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lims1Q99JW4 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lims1Q99JW4 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lims1Q99JW4 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lims1Q99JW4 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 AC108846.1-201ENSMUST00000214531 513 ntBASIC13.87□□□□□ -0.19
Lims1Q99JW4 AC153889.1-201ENSMUST00000219257 330 ntBASIC13.87□□□□□ -0.19
Lims1Q99JW4 AC122024.2-201ENSMUST00000220086 871 ntBASIC13.87□□□□□ -0.19
Lims1Q99JW4 AC124569.2-201ENSMUST00000225998 818 ntBASIC13.87□□□□□ -0.19
Lims1Q99JW4 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Gm7901-201ENSMUST00000120430 1597 ntBASIC13.87□□□□□ -0.19
Lims1Q99JW4 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Lims1Q99JW4 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Gm8655-201ENSMUST00000221159 852 ntBASIC13.86□□□□□ -0.19
Lims1Q99JW4 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 AC157650.3-201ENSMUST00000225058 1476 ntBASIC13.86□□□□□ -0.19
Lims1Q99JW4 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lims1Q99JW4 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Gm43205-201ENSMUST00000198622 1968 ntBASIC13.85□□□□□ -0.19
Lims1Q99JW4 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Lims1Q99JW4 Gm12008-201ENSMUST00000117791 755 ntBASIC13.85□□□□□ -0.19
Lims1Q99JW4 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms