Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Ushbp1Q8R370 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Gm10175-201ENSMUST00000086013 645 ntBASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ushbp1Q8R370 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.03■□□□□ 0.32
Ushbp1Q8R370 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Auts2-212ENSMUST00000178555 309 ntBASIC17.02■□□□□ 0.32
Ushbp1Q8R370 AC084391.1-201ENSMUST00000200651 141 ntBASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Ndufaf2-202ENSMUST00000223734 556 ntBASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Ushbp1Q8R370 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ushbp1Q8R370 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Gm27646-201ENSMUST00000183989 110 ntBASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ushbp1Q8R370 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms