Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Syne4Q8CII8 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Gm6473-201ENSMUST00000188572 1210 ntBASIC17.13■□□□□ 0.33
Syne4Q8CII8 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Syne4Q8CII8 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Gm12490-201ENSMUST00000120255 560 ntBASIC17.12■□□□□ 0.33
Syne4Q8CII8 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC17.12■□□□□ 0.33
Syne4Q8CII8 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Syne4Q8CII8 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Syne4Q8CII8 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Syne4Q8CII8 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Gm14928-201ENSMUST00000120198 477 ntBASIC17.1■□□□□ 0.33
Syne4Q8CII8 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Syne4Q8CII8 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms