Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim47Q8C0E3 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC16.83■□□□□ 0.29
Trim47Q8C0E3 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
Trim47Q8C0E3 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.29
Trim47Q8C0E3 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
Trim47Q8C0E3 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
Trim47Q8C0E3 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Gm9385-201ENSMUST00000117563 472 ntBASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Gm14822-201ENSMUST00000122247 291 ntBASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Gm24513-201ENSMUST00000174964 138 ntBASIC16.83■□□□□ 0.28
Trim47Q8C0E3 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Gm15500-202ENSMUST00000071641 1019 ntBASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim47Q8C0E3 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Gm16198-201ENSMUST00000118766 670 ntBASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Gm17271-201ENSMUST00000165535 355 ntBASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Gm27397-201ENSMUST00000184997 107 ntBASIC16.82■□□□□ 0.28
Trim47Q8C0E3 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Gm43575-201ENSMUST00000196420 516 ntBASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Thap2-203ENSMUST00000218989 527 ntBASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Ndufaf2-202ENSMUST00000223734 556 ntBASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim47Q8C0E3 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Gm5648-201ENSMUST00000122244 1587 ntBASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 BC037039-201ENSMUST00000192003 2205 ntBASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim47Q8C0E3 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms