Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC15.33■□□□□ 0.04
Six4Q61321 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Six4Q61321 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Six4Q61321 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC15.33■□□□□ 0.04
Six4Q61321 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Six4Q61321 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Six4Q61321 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Six4Q61321 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Six4Q61321 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Six4Q61321 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 AC025913.2-201ENSMUST00000220136 1766 ntBASIC15.32■□□□□ 0.04
Six4Q61321 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Six4Q61321 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Six4Q61321 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Six4Q61321 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC15.32■□□□□ 0.04
Six4Q61321 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC15.32■□□□□ 0.04
Six4Q61321 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC15.32■□□□□ 0.04
Six4Q61321 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Six4Q61321 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Six4Q61321 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
Six4Q61321 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Six4Q61321 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Six4Q61321 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
Six4Q61321 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
Six4Q61321 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
Six4Q61321 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC15.31■□□□□ 0.04
Six4Q61321 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Six4Q61321 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC15.31■□□□□ 0.04
Six4Q61321 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Six4Q61321 Gm9727-201ENSMUST00000161387 555 ntBASIC15.31■□□□□ 0.04
Six4Q61321 AC164567.1-201ENSMUST00000219185 960 ntBASIC15.31■□□□□ 0.04
Six4Q61321 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 AC131586.3-201ENSMUST00000228355 1367 ntBASIC15.31■□□□□ 0.04
Six4Q61321 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Six4Q61321 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Gm29340-201ENSMUST00000188763 3854 ntBASIC15.3■□□□□ 0.04
Six4Q61321 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC15.3■□□□□ 0.04
Six4Q61321 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Gm10584-201ENSMUST00000207036 2628 ntBASIC15.3■□□□□ 0.04
Six4Q61321 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC15.3■□□□□ 0.04
Six4Q61321 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Gm7229-201ENSMUST00000214719 1007 ntBASIC15.3■□□□□ 0.04
Six4Q61321 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Six4Q61321 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Six4Q61321 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms