Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Usf1Q61069 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Usf1Q61069 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Usf1Q61069 Gm7653-201ENSMUST00000214567 508 ntBASIC13.82□□□□□ -0.2
Usf1Q61069 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Usf1Q61069 CT010506.4-201ENSMUST00000225457 351 ntBASIC13.82□□□□□ -0.2
Usf1Q61069 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usf1Q61069 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Usf1Q61069 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC13.82□□□□□ -0.2
Usf1Q61069 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usf1Q61069 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Usf1Q61069 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usf1Q61069 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Usf1Q61069 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC13.81□□□□□ -0.2
Usf1Q61069 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC13.81□□□□□ -0.2
Usf1Q61069 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Usf1Q61069 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Gm14767-201ENSMUST00000121559 586 ntBASIC13.81□□□□□ -0.2
Usf1Q61069 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC13.81□□□□□ -0.2
Usf1Q61069 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC13.81□□□□□ -0.2
Usf1Q61069 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Gm8116-201ENSMUST00000182917 1201 ntBASIC13.81□□□□□ -0.2
Usf1Q61069 Gm29541-201ENSMUST00000191351 678 ntBASIC13.81□□□□□ -0.2
Usf1Q61069 Gm44855-201ENSMUST00000205725 362 ntBASIC13.81□□□□□ -0.2
Usf1Q61069 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Usf1Q61069 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Usf1Q61069 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usf1Q61069 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Usf1Q61069 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Usf1Q61069 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Usf1Q61069 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Usf1Q61069 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Usf1Q61069 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
Usf1Q61069 Gm13015-201ENSMUST00000118674 204 ntBASIC13.8□□□□□ -0.2
Usf1Q61069 Gm14719-201ENSMUST00000121891 340 ntBASIC13.8□□□□□ -0.2
Usf1Q61069 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC13.8□□□□□ -0.2
Usf1Q61069 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Usf1Q61069 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Gm28630-201ENSMUST00000187806 498 ntBASIC13.8□□□□□ -0.2
Usf1Q61069 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Usf1Q61069 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC13.8□□□□□ -0.2
Usf1Q61069 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Usf1Q61069 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Usf1Q61069 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usf1Q61069 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
Usf1Q61069 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC13.79□□□□□ -0.2
Usf1Q61069 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Usf1Q61069 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
Usf1Q61069 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC13.79□□□□□ -0.2
Usf1Q61069 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Gm9063-201ENSMUST00000223299 582 ntBASIC13.79□□□□□ -0.2
Usf1Q61069 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
Usf1Q61069 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC13.79□□□□□ -0.2
Usf1Q61069 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usf1Q61069 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Usf1Q61069 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC13.79□□□□□ -0.2
Usf1Q61069 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC13.79□□□□□ -0.2
Usf1Q61069 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms