Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Trim58Q5NCC9 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim58Q5NCC9 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
Trim58Q5NCC9 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Gm11764-201ENSMUST00000120221 623 ntBASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim58Q5NCC9 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trim58Q5NCC9 Gm38318-201ENSMUST00000195769 1706 ntBASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Gm43195-201ENSMUST00000200614 2332 ntBASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Gm7153-201ENSMUST00000117092 455 ntBASIC19.22■□□□□ 0.67
Trim58Q5NCC9 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim58Q5NCC9 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Gm15173-201ENSMUST00000122049 433 ntBASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Gm6550-201ENSMUST00000187574 993 ntBASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim58Q5NCC9 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim58Q5NCC9 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim58Q5NCC9 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim58Q5NCC9 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
Trim58Q5NCC9 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim58Q5NCC9 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms