Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Gm42670-201ENSMUST00000201816 1292 ntBASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Gm44443-201ENSMUST00000204396 5633 ntBASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 AC084391.1-201ENSMUST00000200651 141 ntBASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Upf3bQ3ULL6 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.27■□□□□ 0.19
Upf3bQ3ULL6 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Upf3bQ3ULL6 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Upf3bQ3ULL6 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Upf3bQ3ULL6 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Upf3bQ3ULL6 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Upf3bQ3ULL6 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Upf3bQ3ULL6 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Upf3bQ3ULL6 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Upf3bQ3ULL6 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
Upf3bQ3ULL6 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Gm44771-201ENSMUST00000206975 626 ntBASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Upf3bQ3ULL6 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Gm1401-201ENSMUST00000122048 772 ntBASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 AC154222.1-201ENSMUST00000223882 475 ntBASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3bQ3ULL6 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms