Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Gm5867-201ENSMUST00000063197 592 ntBASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col28a1Q2UY11 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Gm27459-201ENSMUST00000184860 107 ntBASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Prkcz2-201ENSMUST00000206136 1756 ntBASIC14.79□□□□□ -0.04
Col28a1Q2UY11 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col28a1Q2UY11 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Gm12620-201ENSMUST00000119791 1986 ntBASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Gm12612-201ENSMUST00000140182 1986 ntBASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Gm13884-201ENSMUST00000118103 829 ntBASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 AC127302.2-201ENSMUST00000215212 268 ntBASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col28a1Q2UY11 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col28a1Q2UY11 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Mir8098-201ENSMUST00000184011 137 ntBASIC14.77□□□□□ -0.05
Col28a1Q2UY11 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col28a1Q2UY11 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms