Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC12.96□□□□□ -0.33
Col8a1Q00780 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC12.96□□□□□ -0.33
Col8a1Q00780 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
Col8a1Q00780 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Col8a1Q00780 Gm44855-201ENSMUST00000205725 362 ntBASIC12.96□□□□□ -0.33
Col8a1Q00780 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC12.96□□□□□ -0.33
Col8a1Q00780 Gm7730-201ENSMUST00000212486 454 ntBASIC12.96□□□□□ -0.33
Col8a1Q00780 Rbfox2-208ENSMUST00000227930 1218 ntBASIC12.96□□□□□ -0.33
Col8a1Q00780 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC12.96□□□□□ -0.34
Col8a1Q00780 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col8a1Q00780 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col8a1Q00780 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col8a1Q00780 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Col8a1Q00780 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col8a1Q00780 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col8a1Q00780 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col8a1Q00780 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col8a1Q00780 Gm37812-201ENSMUST00000195216 2475 ntBASIC12.96□□□□□ -0.34
Col8a1Q00780 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col8a1Q00780 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col8a1Q00780 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col8a1Q00780 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col8a1Q00780 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col8a1Q00780 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC12.95□□□□□ -0.34
Col8a1Q00780 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Gm12008-201ENSMUST00000117791 755 ntBASIC12.95□□□□□ -0.34
Col8a1Q00780 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Gm16215-201ENSMUST00000161990 637 ntBASIC12.95□□□□□ -0.34
Col8a1Q00780 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Col8a1Q00780 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC12.95□□□□□ -0.34
Col8a1Q00780 Gm6888-201ENSMUST00000221983 706 ntBASIC12.95□□□□□ -0.34
Col8a1Q00780 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC12.95□□□□□ -0.34
Col8a1Q00780 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col8a1Q00780 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Gm26596-201ENSMUST00000180464 2655 ntBASIC12.95□□□□□ -0.34
Col8a1Q00780 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col8a1Q00780 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC12.94□□□□□ -0.34
Col8a1Q00780 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Dancr-204ENSMUST00000132389 2347 ntBASIC12.94□□□□□ -0.34
Col8a1Q00780 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC12.94□□□□□ -0.34
Col8a1Q00780 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Col8a1Q00780 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Gm7488-201ENSMUST00000117148 684 ntBASIC12.94□□□□□ -0.34
Col8a1Q00780 Gm12490-201ENSMUST00000120255 560 ntBASIC12.94□□□□□ -0.34
Col8a1Q00780 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Col8a1Q00780 Gm43433-201ENSMUST00000196573 481 ntBASIC12.94□□□□□ -0.34
Col8a1Q00780 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Col8a1Q00780 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Gm25857-201ENSMUST00000082788 129 ntBASIC12.94□□□□□ -0.34
Col8a1Q00780 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC12.94□□□□□ -0.34
Col8a1Q00780 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Col8a1Q00780 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Gm11841-201ENSMUST00000117060 1963 ntBASIC12.94□□□□□ -0.34
Col8a1Q00780 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col8a1Q00780 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms