Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC12.63□□□□□ -0.39
Hmgb3O54879 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Gm3375-201ENSMUST00000203929 796 ntBASIC12.63□□□□□ -0.39
Hmgb3O54879 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Hmgb3O54879 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Hmgb3O54879 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
Hmgb3O54879 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Hmgb3O54879 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 AC132265.1-201ENSMUST00000219233 1665 ntBASIC12.62□□□□□ -0.39
Hmgb3O54879 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Gm6858-201ENSMUST00000208582 1468 ntBASIC12.62□□□□□ -0.39
Hmgb3O54879 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC12.62□□□□□ -0.39
Hmgb3O54879 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC12.62□□□□□ -0.39
Hmgb3O54879 Gm3272-201ENSMUST00000181181 1229 ntBASIC12.62□□□□□ -0.39
Hmgb3O54879 Gm7370-201ENSMUST00000219471 767 ntBASIC12.62□□□□□ -0.39
Hmgb3O54879 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Gm10566-201ENSMUST00000086739 996 ntBASIC12.62□□□□□ -0.39
Hmgb3O54879 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Hmgb3O54879 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC12.62□□□□□ -0.39
Hmgb3O54879 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Hmgb3O54879 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Hmgb3O54879 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hmgb3O54879 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC12.61□□□□□ -0.39
Hmgb3O54879 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Gm27463-201ENSMUST00000183569 57 ntBASIC12.61□□□□□ -0.39
Hmgb3O54879 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC12.61□□□□□ -0.39
Hmgb3O54879 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Gm11839-201ENSMUST00000120647 1953 ntBASIC12.61□□□□□ -0.39
Hmgb3O54879 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hmgb3O54879 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC12.61□□□□□ -0.39
Hmgb3O54879 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms