Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Gm12497-201ENSMUST00000138778 237 ntBASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Smc1aQ9CU62 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Smc1aQ9CU62 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Gm15590-201ENSMUST00000078419 552 ntBASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Smc1aQ9CU62 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Smc1aQ9CU62 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms