Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cstf1Q99LC2 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cstf1Q99LC2 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cstf1Q99LC2 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cstf1Q99LC2 Wnt10b-206ENSMUST00000228546 2709 ntBASIC15.23■□□□□ 0.03
Cstf1Q99LC2 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Wdyhv1-203ENSMUST00000226889 394 ntBASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 AC069562.2-201ENSMUST00000224644 2146 ntBASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Cstf1Q99LC2 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Gm8839-201ENSMUST00000121279 1645 ntBASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Gm27618-201ENSMUST00000183671 60 ntBASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Gm10154-201ENSMUST00000084445 354 ntBASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Cstf1Q99LC2 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Cstf1Q99LC2 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Cstf1Q99LC2 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Cstf1Q99LC2 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Gm5184-201ENSMUST00000220417 1702 ntBASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cstf1Q99LC2 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms