Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Gm4995-201ENSMUST00000117247 432 ntBASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 AC084391.1-201ENSMUST00000200651 141 ntBASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
Vps53Q8CCB4 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps53Q8CCB4 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Vps53Q8CCB4 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.42
Vps53Q8CCB4 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps53Q8CCB4 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps53Q8CCB4 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps53Q8CCB4 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps53Q8CCB4 AC122901.1-201ENSMUST00000214203 1790 ntBASIC17.69■□□□□ 0.42
Vps53Q8CCB4 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps53Q8CCB4 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC17.69■□□□□ 0.42
Vps53Q8CCB4 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
Vps53Q8CCB4 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.69■□□□□ 0.42
Vps53Q8CCB4 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.69■□□□□ 0.42
Vps53Q8CCB4 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms