Protein–RNA interactions for Protein: Q8BUM9

Usp43, Ubiquitin carboxyl-terminal hydrolase 43, mousemouse

Predictions only

Length 1,132 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp43Q8BUM9 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Gm7787-201ENSMUST00000216858 688 ntBASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Gm38318-201ENSMUST00000195769 1706 ntBASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Usp43Q8BUM9 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Best4-ps-201ENSMUST00000129783 1380 ntBASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Gm18195-201ENSMUST00000207604 706 ntBASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Usp43Q8BUM9 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Sybu-209ENSMUST00000228639 4113 ntBASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 AC174678.1-201ENSMUST00000228007 2749 ntBASIC15.41■□□□□ 0.06
Usp43Q8BUM9 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Gm13036-201ENSMUST00000117799 748 ntBASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Gm4899-201ENSMUST00000178708 719 ntBASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Gm9449-201ENSMUST00000207265 1011 ntBASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Usp43Q8BUM9 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp43Q8BUM9 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Usp43Q8BUM9 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp43Q8BUM9 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp43Q8BUM9 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp43Q8BUM9 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Usp43Q8BUM9 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC15.4■□□□□ 0.06
Usp43Q8BUM9 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms