Protein–RNA interactions for Protein: Q8BMK4

Ckap4, Cytoskeleton-associated protein 4, mousemouse

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ckap4Q8BMK4 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 AC154471.1-201ENSMUST00000224418 436 ntBASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ckap4Q8BMK4 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Gm44454-201ENSMUST00000198541 138 ntBASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ckap4Q8BMK4 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ckap4Q8BMK4 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ckap4Q8BMK4 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Ckap4Q8BMK4 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ckap4Q8BMK4 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ckap4Q8BMK4 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ckap4Q8BMK4 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Gm7367-201ENSMUST00000057611 492 ntBASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Ckap4Q8BMK4 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Gm27357-201ENSMUST00000183754 135 ntBASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ckap4Q8BMK4 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 61.8 ms