Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC17.32■□□□□ 0.36
Usp28Q5I043 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Gm45504-201ENSMUST00000211407 2107 ntBASIC17.32■□□□□ 0.36
Usp28Q5I043 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Usp28Q5I043 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Usp28Q5I043 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Gm11780-201ENSMUST00000136880 516 ntBASIC17.32■□□□□ 0.36
Usp28Q5I043 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.32■□□□□ 0.36
Usp28Q5I043 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC17.32■□□□□ 0.36
Usp28Q5I043 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Usp28Q5I043 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
Usp28Q5I043 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Usp28Q5I043 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Usp28Q5I043 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC17.31■□□□□ 0.36
Usp28Q5I043 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Usp28Q5I043 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Usp28Q5I043 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.31■□□□□ 0.36
Usp28Q5I043 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Gm6296-201ENSMUST00000222599 943 ntBASIC17.31■□□□□ 0.36
Usp28Q5I043 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
Usp28Q5I043 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Usp28Q5I043 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Usp28Q5I043 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp28Q5I043 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC17.3■□□□□ 0.36
Usp28Q5I043 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.3■□□□□ 0.36
Usp28Q5I043 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.3■□□□□ 0.36
Usp28Q5I043 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC17.3■□□□□ 0.36
Usp28Q5I043 AC159106.1-201ENSMUST00000224421 690 ntBASIC17.3■□□□□ 0.36
Usp28Q5I043 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Gm43195-201ENSMUST00000200614 2332 ntBASIC17.3■□□□□ 0.36
Usp28Q5I043 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp28Q5I043 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms