Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col28a1Q2UY11 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col28a1Q2UY11 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col28a1Q2UY11 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col28a1Q2UY11 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col28a1Q2UY11 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Gm12134-201ENSMUST00000122109 520 ntBASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Gm5864-201ENSMUST00000202263 970 ntBASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Gm6443-201ENSMUST00000203599 874 ntBASIC14.83□□□□□ -0.04
Col28a1Q2UY11 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col28a1Q2UY11 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Gm5049-201ENSMUST00000195878 1590 ntBASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Camk2g-217ENSMUST00000226630 1937 ntBASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Col28a1Q2UY11 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Gm15794-201ENSMUST00000120182 631 ntBASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col28a1Q2UY11 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms