Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Tnfsf4P43488 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Tnfsf4P43488 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Tnfsf4P43488 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Tnfsf4P43488 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.74□□□□□ -0.05
Tnfsf4P43488 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Tnfsf4P43488 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Gm4459-201ENSMUST00000118750 468 ntBASIC14.73□□□□□ -0.05
Tnfsf4P43488 Gm12497-201ENSMUST00000138778 237 ntBASIC14.73□□□□□ -0.05
Tnfsf4P43488 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Gm27867-201ENSMUST00000184778 125 ntBASIC14.73□□□□□ -0.05
Tnfsf4P43488 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.73□□□□□ -0.05
Tnfsf4P43488 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.73□□□□□ -0.05
Tnfsf4P43488 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Tnfsf4P43488 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.72□□□□□ -0.05
Tnfsf4P43488 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.72□□□□□ -0.05
Tnfsf4P43488 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.72□□□□□ -0.05
Tnfsf4P43488 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC14.72□□□□□ -0.05
Tnfsf4P43488 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Gm7506-201ENSMUST00000207758 815 ntBASIC14.71□□□□□ -0.05
Tnfsf4P43488 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Tnfsf4P43488 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
Tnfsf4P43488 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
Tnfsf4P43488 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms