Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm9728-201ENSMUST00000200197 1055 ntBASIC19.98■□□□□ 0.79
Col18a1P39061 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Gm14452-201ENSMUST00000118680 1632 ntBASIC19.97■□□□□ 0.79
Col18a1P39061 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col18a1P39061 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Col18a1P39061 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col18a1P39061 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC19.97■□□□□ 0.79
Col18a1P39061 AC159896.2-201ENSMUST00000214753 269 ntBASIC19.97■□□□□ 0.79
Col18a1P39061 AC154319.1-201ENSMUST00000216330 312 ntBASIC19.97■□□□□ 0.79
Col18a1P39061 AC121804.3-201ENSMUST00000223420 295 ntBASIC19.97■□□□□ 0.79
Col18a1P39061 AL589735.1-201ENSMUST00000224353 270 ntBASIC19.97■□□□□ 0.79
Col18a1P39061 CT485787.1-201ENSMUST00000225617 968 ntBASIC19.97■□□□□ 0.79
Col18a1P39061 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col18a1P39061 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col18a1P39061 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col18a1P39061 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col18a1P39061 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col18a1P39061 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col18a1P39061 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Col18a1P39061 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC19.96■□□□□ 0.79
Col18a1P39061 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Gm7446-201ENSMUST00000221035 1240 ntBASIC19.96■□□□□ 0.79
Col18a1P39061 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Col18a1P39061 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Col18a1P39061 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.96■□□□□ 0.79
Col18a1P39061 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col18a1P39061 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC19.95■□□□□ 0.78
Col18a1P39061 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC19.95■□□□□ 0.78
Col18a1P39061 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC19.95■□□□□ 0.78
Col18a1P39061 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Col18a1P39061 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.95■□□□□ 0.78
Col18a1P39061 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC19.95■□□□□ 0.78
Col18a1P39061 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC19.95■□□□□ 0.78
Col18a1P39061 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col18a1P39061 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC19.95■□□□□ 0.78
Col18a1P39061 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col18a1P39061 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col18a1P39061 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col18a1P39061 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col18a1P39061 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Col18a1P39061 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC19.94■□□□□ 0.78
Col18a1P39061 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC19.94■□□□□ 0.78
Col18a1P39061 Gm6944-201ENSMUST00000182449 1006 ntBASIC19.94■□□□□ 0.78
Col18a1P39061 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col18a1P39061 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col18a1P39061 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col18a1P39061 Gm45667-201ENSMUST00000210380 1316 ntBASIC19.93■□□□□ 0.78
Col18a1P39061 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.93■□□□□ 0.78
Col18a1P39061 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC19.93■□□□□ 0.78
Col18a1P39061 Mup-ps23-201ENSMUST00000118063 630 ntBASIC19.93■□□□□ 0.78
Col18a1P39061 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC19.93■□□□□ 0.78
Col18a1P39061 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Col18a1P39061 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC19.93■□□□□ 0.78
Col18a1P39061 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC19.93■□□□□ 0.78
Col18a1P39061 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC19.93■□□□□ 0.78
Col18a1P39061 Olfr286-202ENSMUST00000205305 969 ntBASIC19.93■□□□□ 0.78
Col18a1P39061 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC19.93■□□□□ 0.78
Col18a1P39061 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 AC140451.2-201ENSMUST00000228030 664 ntBASIC19.93■□□□□ 0.78
Col18a1P39061 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col18a1P39061 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Col18a1P39061 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col18a1P39061 Gm15393-201ENSMUST00000120499 219 ntBASIC19.92■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms