Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Col3a1P08121 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC18.04■□□□□ 0.48
Col3a1P08121 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Col3a1P08121 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Col3a1P08121 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Asic1-205ENSMUST00000228185 1818 ntBASIC18.03■□□□□ 0.48
Col3a1P08121 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC18.03■□□□□ 0.48
Col3a1P08121 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Gm18766-201ENSMUST00000189811 808 ntBASIC18.03■□□□□ 0.48
Col3a1P08121 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Col3a1P08121 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 BC037039-201ENSMUST00000192003 2205 ntBASIC18.03■□□□□ 0.48
Col3a1P08121 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col3a1P08121 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col3a1P08121 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col3a1P08121 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col3a1P08121 Gm6539-201ENSMUST00000119157 1064 ntBASIC18.02■□□□□ 0.48
Col3a1P08121 Gm13464-201ENSMUST00000119418 935 ntBASIC18.02■□□□□ 0.48
Col3a1P08121 Gm4691-201ENSMUST00000182339 1000 ntBASIC18.02■□□□□ 0.48
Col3a1P08121 Gm27680-201ENSMUST00000184192 160 ntBASIC18.02■□□□□ 0.48
Col3a1P08121 Gm2451-201ENSMUST00000199447 999 ntBASIC18.02■□□□□ 0.48
Col3a1P08121 Gm10290-201ENSMUST00000200451 999 ntBASIC18.02■□□□□ 0.48
Col3a1P08121 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC18.02■□□□□ 0.48
Col3a1P08121 Arhgef33-209ENSMUST00000225223 714 ntBASIC18.02■□□□□ 0.48
Col3a1P08121 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col3a1P08121 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Col3a1P08121 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col3a1P08121 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col3a1P08121 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC18.02■□□□□ 0.48
Col3a1P08121 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col3a1P08121 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
Col3a1P08121 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col3a1P08121 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col3a1P08121 Tfap2a-203ENSMUST00000223869 2037 ntBASIC18.02■□□□□ 0.48
Col3a1P08121 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col3a1P08121 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col3a1P08121 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC18.02■□□□□ 0.47
Col3a1P08121 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col3a1P08121 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col3a1P08121 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col3a1P08121 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.02■□□□□ 0.47
Col3a1P08121 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col3a1P08121 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC18.02■□□□□ 0.47
Col3a1P08121 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC18.01■□□□□ 0.47
Col3a1P08121 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC18.01■□□□□ 0.47
Col3a1P08121 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC18.01■□□□□ 0.47
Col3a1P08121 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC18.01■□□□□ 0.47
Col3a1P08121 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
Col3a1P08121 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Gm5479-201ENSMUST00000160578 435 ntBASIC18.01■□□□□ 0.47
Col3a1P08121 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Col3a1P08121 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
Col3a1P08121 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col3a1P08121 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Col3a1P08121 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Col3a1P08121 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC18■□□□□ 0.47
Col3a1P08121 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC18■□□□□ 0.47
Col3a1P08121 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC18■□□□□ 0.47
Col3a1P08121 AC164565.1-201ENSMUST00000217520 1484 ntBASIC18■□□□□ 0.47
Col3a1P08121 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Col3a1P08121 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms