Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC12.66□□□□□ -0.38
Hmgb3O54879 Gm43353-201ENSMUST00000199224 1295 ntBASIC12.66□□□□□ -0.38
Hmgb3O54879 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Hmgb3O54879 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Hmgb3O54879 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Hmgb3O54879 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Hmgb3O54879 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Hmgb3O54879 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Hmgb3O54879 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Hmgb3O54879 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Hmgb3O54879 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Hmgb3O54879 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC12.65□□□□□ -0.39
Hmgb3O54879 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Hmgb3O54879 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Hmgb3O54879 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Hmgb3O54879 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC12.64□□□□□ -0.39
Hmgb3O54879 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Hmgb3O54879 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC12.64□□□□□ -0.39
Hmgb3O54879 Gm29707-201ENSMUST00000196325 491 ntBASIC12.64□□□□□ -0.39
Hmgb3O54879 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC12.64□□□□□ -0.39
Hmgb3O54879 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Hmgb3O54879 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Hmgb3O54879 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Gm43697-201ENSMUST00000199637 2581 ntBASIC12.64□□□□□ -0.39
Hmgb3O54879 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Hmgb3O54879 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hmgb3O54879 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Hmgb3O54879 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
Hmgb3O54879 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms