Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Gm5370-201ENSMUST00000187187 574 ntBASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Gm18307-201ENSMUST00000206864 949 ntBASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 AC154527.2-201ENSMUST00000225256 1466 ntBASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Gm8565-201ENSMUST00000183259 1014 ntBASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Gm27847-201ENSMUST00000183711 107 ntBASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Gm27375-201ENSMUST00000183799 107 ntBASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Gm29127-201ENSMUST00000188304 517 ntBASIC17.17■□□□□ 0.34
Upf1Q9EPU0 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Upf1Q9EPU0 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Gm7993-201ENSMUST00000200970 1384 ntBASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 AC122459.1-201ENSMUST00000228373 885 ntBASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Gm6091-201ENSMUST00000098307 165 ntBASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf1Q9EPU0 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Mir8109-201ENSMUST00000184375 117 ntBASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Gm7783-201ENSMUST00000204795 781 ntBASIC17.15■□□□□ 0.34
Upf1Q9EPU0 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf1Q9EPU0 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Upf1Q9EPU0 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Upf1Q9EPU0 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms