Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vps28Q9D1C8 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Vps28Q9D1C8 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Vps28Q9D1C8 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Vps28Q9D1C8 Gm11873-201ENSMUST00000117877 1304 ntBASIC15.66■□□□□ 0.1
Vps28Q9D1C8 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC15.66■□□□□ 0.1
Vps28Q9D1C8 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 App-207ENSMUST00000227737 2827 ntBASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Gm14722-201ENSMUST00000118943 689 ntBASIC15.65■□□□□ 0.1
Vps28Q9D1C8 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Gm5712-201ENSMUST00000199748 1043 ntBASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Vps28Q9D1C8 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Gm8000-201ENSMUST00000188378 592 ntBASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 AC147366.1-201ENSMUST00000227671 852 ntBASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Vps28Q9D1C8 Best4-ps-201ENSMUST00000129783 1380 ntBASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Vps28Q9D1C8 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Vps28Q9D1C8 Gm11453-201ENSMUST00000117318 1007 ntBASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms