Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 AC158538.2-201ENSMUST00000225455 906 ntBASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Gm15358-201ENSMUST00000119249 520 ntBASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ushbp1Q8R370 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Gm7063-201ENSMUST00000186840 981 ntBASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Gm10576-201ENSMUST00000191927 825 ntBASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Gm45683-201ENSMUST00000210825 1247 ntBASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ushbp1Q8R370 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 AC093926.2-201ENSMUST00000214468 1228 ntBASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ushbp1Q8R370 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Ushbp1Q8R370 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ushbp1Q8R370 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.08■□□□□ 0.33
Ushbp1Q8R370 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Ushbp1Q8R370 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Ushbp1Q8R370 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Ushbp1Q8R370 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ushbp1Q8R370 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC17.08■□□□□ 0.32
Ushbp1Q8R370 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms