Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Gm18733-201ENSMUST00000173950 856 ntBASIC18.44■□□□□ 0.54
Brf1Q8CFK2 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Gm7787-201ENSMUST00000216858 688 ntBASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Brf1Q8CFK2 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Gm43935-201ENSMUST00000203569 1050 ntBASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 AC154412.1-201ENSMUST00000226540 2786 ntBASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Gm29340-201ENSMUST00000188763 3854 ntBASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Brf1Q8CFK2 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Brf1Q8CFK2 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 CT009510.1-201ENSMUST00000227972 270 ntBASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Brf1Q8CFK2 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC18.4■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms