Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Gm7222-201ENSMUST00000117512 906 ntBASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Vps53Q8CCB4 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Vps53Q8CCB4 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC17.77■□□□□ 0.43
Vps53Q8CCB4 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Vps53Q8CCB4 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Vps53Q8CCB4 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC17.77■□□□□ 0.43
Vps53Q8CCB4 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Vps53Q8CCB4 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 AC090659.1-201ENSMUST00000224334 768 ntBASIC17.76■□□□□ 0.43
Vps53Q8CCB4 AC154621.1-201ENSMUST00000226155 1119 ntBASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Vps53Q8CCB4 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps53Q8CCB4 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Gm14822-201ENSMUST00000122247 291 ntBASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Vps53Q8CCB4 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps53Q8CCB4 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms