Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Gm18889-201ENSMUST00000174284 929 ntBASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Mir6990-201ENSMUST00000183724 91 ntBASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx58Q6Q899 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddx58Q6Q899 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddx58Q6Q899 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddx58Q6Q899 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 CT030684.1-201ENSMUST00000227292 914 ntBASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx58Q6Q899 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Gm16026-204ENSMUST00000162652 683 ntBASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Gm5312-201ENSMUST00000203728 547 ntBASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Gm18057-201ENSMUST00000208220 503 ntBASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx58Q6Q899 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Prob1-201ENSMUST00000097619 3021 ntBASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Nudt18-203ENSMUST00000228768 1578 ntBASIC18.81■□□□□ 0.6
Ddx58Q6Q899 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx58Q6Q899 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms