Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Gm5184-201ENSMUST00000220417 1702 ntBASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Gm10499-201ENSMUST00000174094 934 ntBASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC17.1■□□□□ 0.33
Usp49Q6P9L4 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp49Q6P9L4 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Gm15173-201ENSMUST00000122049 433 ntBASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Mzt1-203ENSMUST00000227948 952 ntBASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 AC157650.3-201ENSMUST00000225058 1476 ntBASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp49Q6P9L4 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
Usp49Q6P9L4 Gm37736-201ENSMUST00000193564 2802 ntBASIC17.08■□□□□ 0.33
Usp49Q6P9L4 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp49Q6P9L4 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp49Q6P9L4 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Gm7230-201ENSMUST00000173026 815 ntBASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 CT009510.1-201ENSMUST00000227972 270 ntBASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Gm45133-201ENSMUST00000207548 2773 ntBASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Usp49Q6P9L4 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Gm13884-201ENSMUST00000118103 829 ntBASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp49Q6P9L4 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms